Home | # Program
| ### Synopsis
    #command line arguments in the following way
    args[0]:pval_file,
    args[1]:affy_go_file,
    args[2]:Go_name_file,
    args[3]:ug_file,
    args[4]:destination_file,
    args[5]:method,
    args[6]:class_max_size,
    args[7]:class_min_size,
    args[8]:number of runs,
    args[9]:quantile,
    args[10]:p-value,
    args[11]:weightcheck

    **notce: all "data files" and this "command line file" should be put under the directory ermineJ\src

    examples:
    1. java erminecmd age.welch.pvals.highexpression.forerminej.txt MG-U74Av2.go.txt goNames.txt MG-U74Av2.ug.txt output-quantile-log2.txt QUANTILE_METHOD 100 4 10000 50 0.001 true
    2. java erminecmd age.welch.pvals.highexpression.forerminej.txt MG-U74Av2.go.txt goNames.txt MG-U74Av2.ug.txt output-mean-log3.txt MEAN_METHOD 100 4 10000 50 0.0001 true

    For program introduction and methods detail, please click here.
### Inputs Dataset I 1. Pval File -- one-way-anova-parsed.txt 2. Affy GO File -- HG-U95Av2.go.txt 3. Go Biological Names File -- goName.txt 4. Unigene File -- HG-U95Av2.ug.txt Dataset II 1. Pval File -- armstrong-owaov.txt 2. Affy GO File -- HG-U95Av2.go.txt 3. Go Biological Names File -- goName.txt 4. Unigene File -- HG-U95Av2.ug.txt Dataset III 1. Pval File -- age.welch.pvals.highexpression.forerminej.txt 2. Affy GO File -- MG-U74Av2.go.txt 3. Go Biological Names File -- goName.txt 4. Unigene File -- MG-U74Av2.ug.txt Dataset IV 1. Pval File -- schinke-owaov.txt 2. Affy GO File -- MG-U74Av2.go.txt 3. Go Biological Names File -- goName.txt 4. Unigene File -- MG-U74Av2.ug.txt ### Outputs for Dataset I txt file excel file for Dataset II txt file excel file for Dataset III txt file excel file for Dataset IV txt file excel file ### Dependencies None. ### Problems/bugs None known. ### Version history CVS on rbp1sun: CVS on gene ### References --