Uses of Package
org.biojava.directory

Packages that use org.biojava.directory

org.biojava.bio.program.das	Development client for the Distributed Annotation System.
org.biojava.bio.seq.db.biofetch	Client for the OBDA BioFetch protocol.
org.biojava.bio.seq.db.biosql	General purpose Sequence storage in a relational database.
org.biojava.bio.seq.db.flat	Support for OBDA flatfile databases.
org.biojava.directory	Open Bio Sequence Database Access (OBDA) registry support.

Classes in org.biojava.directory used by org.biojava.bio.program.das

RegistryException
A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.

SequenceDBProvider
Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.

Classes in org.biojava.directory used by org.biojava.bio.seq.db.biofetch

RegistryException
A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.

SequenceDBProvider
Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.

Classes in org.biojava.directory used by org.biojava.bio.seq.db.biosql

RegistryException
A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.

SequenceDBProvider
Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.

Classes in org.biojava.directory used by org.biojava.bio.seq.db.flat

RegistryException
A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.

SequenceDBProvider
Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.

Classes in org.biojava.directory used by org.biojava.directory

Registry
Registry is a factory which gets implementations of the BioJava SequenceDBLite interface.

RegistryConfiguration
The BioDirectory Registry is a simple system for specifying where to find services which provide sequence databases.

RegistryException
A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.