Uses of Interface
org.biojava.bio.symbol.CodonPref

Packages that use CodonPref

org.biojava.bio.symbol

Representation of the Symbols that make up a sequence, and locations within them.

Uses of CodonPref in org.biojava.bio.symbol

Classes in org.biojava.bio.symbol that implement CodonPref

class

SimpleCodonPref a simple no-frills implementation of the CodonPref object that encapsulates codon preference data.

Methods in org.biojava.bio.symbol that return CodonPref

static CodonPref	CodonPrefTools.getCodonPreference(String id) get the specified codon preference.
static CodonPref	CodonPrefTools.readFromXML(InputStream prefStream, String name) reads a specified CodonPref from an file.
static CodonPref[]	CodonPrefTools.readFromXML(InputStream prefStream)
CodonPref	CodonPrefFilter.ByName.getCodonPref()

Methods in org.biojava.bio.symbol with parameters of type CodonPref

static void	CodonPrefTools.writeToXML(CodonPref codonPref, PrintWriter writer) write out a specified CodonPref object in XML format.
void	CodonPrefFilter.put(CodonPref codonPref) handles storage of a CodonPref object
void	CodonPrefFilter.AcceptAll.put(CodonPref codonPref)
void	CodonPrefFilter.ByName.put(CodonPref codonPref)
void	CodonPrefFilter.EverythingToXML.put(CodonPref codonPref)