Package org.biojava.bio.structure

Interfaces and classes for molecular structure.

See:
Description

Interface Summary

Atom
Chain
Group	This is the datastructure for a single Group of atoms.
Structure

Class Summary

AlphaCTools	AlphaCTools is a collection of static convenience methods for dealing with Alpha Carbon Backbone Phi / Psi angles.
AminoAcid	AminoAcid inherits most from Hetatom.
AtomImpl	Implementation of an Atom of a PDB file.
AtomIterator	an iterator over all atoms of a structure / group
Calc	utility operations on Atoms, AminoAcids, etc.
ChainImpl	A Chain in a PDB file.
GroupIterator	an iterator over all groups of a structure
Hetatom	Generic Implementation of a Group interface.
Nucleotide	A nucleotide group is almost the same as a Hetatm group.
StructureImpl	Implementation of a PDBStructure.

Exception Summary

StructureException

An exception during the parsing of a PDB file

Package org.biojava.bio.structure Description

Interfaces and classes for molecular structure.