org.biojava.bio.structure.io
Class PDBSRSReader

java.lang.Object
  org.biojava.bio.structure.io.PDBFileReader
      org.biojava.bio.structure.io.PDBSRSReader

All Implemented Interfaces:

StructureIO, StructureIOFile

public class PDBSRSReader

extends PDBFileReader

reads a PDB file from a local SRS installation using getz Actually is the same as PDBFileReader, but instead of reading from a file stream, reads from a buffered stream.

Constructor Summary

PDBSRSReader()

Method Summary

Structure	getStructure() load a structure from from SRS installation using wgetz requires pdb_code to be set earlier...
Structure	getStructure(String filename) open filename (does not support compressed files!) and returns a PDBStructure object

Methods inherited from class org.biojava.bio.structure.io.PDBFileReader

addExtension, getId, getPath, getTimeStamp, parsePDBFile, parsePDBFile, setId, setPath

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PDBSRSReader

public PDBSRSReader()

Method Detail

getStructure

public Structure getStructure()
                       throws IOException

load a structure from from SRS installation using wgetz requires pdb_code to be set earlier...

Specified by:

getStructure in interface StructureIO

Overrides:

getStructure in class PDBFileReader

Throws:

IOException

getStructure

public Structure getStructure(String filename)
                       throws IOException

open filename (does not support compressed files!) and returns a PDBStructure object

Specified by:

getStructure in interface StructureIO

Overrides:

getStructure in class PDBFileReader

Throws:

IOException