Uses of Interface
org.biojava.bio.structure.Structure

Packages that use Structure

org.biojava.bio.program.das.dasstructure
org.biojava.bio.structure	Interfaces and classes for molecular structure.
org.biojava.bio.structure.io

Uses of Structure in org.biojava.bio.program.das.dasstructure

Methods in org.biojava.bio.program.das.dasstructure that return Structure

Structure

DASStructureCall.getStructure(String pdb_code) connect to a DAS structure service and retreive 3D data.

Uses of Structure in org.biojava.bio.structure

Classes in org.biojava.bio.structure that implement Structure

class

StructureImpl Implementation of a PDBStructure.

Methods in org.biojava.bio.structure with parameters of type Structure

static void	Calc.rotate(Structure structure, double[][] m) rotate a structure
static void	Calc.shift(Structure structure, Atom a) shift a structure with a vector

Constructors in org.biojava.bio.structure with parameters of type Structure

GroupIterator(Structure struct)

AtomIterator(Structure struct)

Uses of Structure in org.biojava.bio.structure.io

Methods in org.biojava.bio.structure.io that return Structure

Structure	StructureIO.getStructure()
Structure	StructureIO.getStructure(String filename) open filename (does not support compressed files, yet...) and returns a PDBStructure object
Structure	PDBSRSReader.getStructure() load a structure from from SRS installation using wgetz requires pdb_code to be set earlier...
Structure	PDBSRSReader.getStructure(String filename) open filename (does not support compressed files!) and returns a PDBStructure object
Structure	PDBFileReader.parsePDBFile(InputStream inStream) parse a PDB file and return a datastructure implementing PDBStructure interface.
Structure	PDBFileReader.parsePDBFile(BufferedReader buf)
Structure	PDBFileReader.getStructure() load a structure from local file system and return a PDBStructure object requires pdb_code to be set earlier...
Structure	PDBFileReader.getStructure(String filename) open filename (does not support compressed files!) and returns a PDBStructure object
Structure	DASStructureClient.getStructure(String pdb_code) set the pdb_code (@see setId) connect to a DAS-structure service and retreive data return a Structure class
Structure	DASStructureClient.getStructure() if pdb code is set (@see setId) connect to a DAS-structure service and retreive data return a Structure class