org.biojava.bio.structure
Interface Atom

All Known Implementing Classes:

AtomImpl

public interface Atom

Author:

andreas simple implementation of an Atom

Method Summary

double[]	getCoords()
String	getFullName()
String	getName()
double	getOccupancy() get occupancy
String	getPDBline()
int	getPDBserial()
double	getTempFactor()
double	getX()
double	getY()
double	getZ()
void	setCoords(double[] c) the coordinates
void	setFullName(String s) full name of atom e.g.
void	setName(String s) trimmed version of atom name, e.g.
void	setOccupancy(double occupancy) set occupancy
void	setPDBline(String s) store the whole line
void	setPDBserial(int i) PDB atom number
void	setTempFactor(double temp)

Method Detail

setName

public void setName(String s)

trimmed version of atom name, e.g. "CA"

getName

public String getName()

setFullName

public void setFullName(String s)

full name of atom e.g. " CA "

getFullName

public String getFullName()

setPDBserial

public void setPDBserial(int i)

PDB atom number

getPDBserial

public int getPDBserial()

setCoords

public void setCoords(double[] c)

the coordinates

getCoords

public double[] getCoords()

getX

public double getX()

getY

public double getY()

getZ

public double getZ()

setPDBline

public void setPDBline(String s)

store the whole line

getPDBline

public String getPDBline()

setOccupancy

public void setOccupancy(double occupancy)

set occupancy

getOccupancy

public double getOccupancy()

get occupancy

setTempFactor

public void setTempFactor(double temp)

getTempFactor

public double getTempFactor()