org.biojava.bio.search

Interfaces  BioMatcher BioPattern SearchBuilder SearchContentHandler SeqSimilaritySearcher SeqSimilaritySearchHit SeqSimilaritySearchResult SeqSimilaritySearchSubHit

Classes  KnuthMorrisPrattSearch MaxMissmatchPattern SearchContentAdapter SearchContentFilter SeqContentPattern SeqSimilaritySearchHit.ByScoreComparator SeqSimilaritySearchHit.BySubHitCountComparator SeqSimilaritySearchSubHit.ByScoreComparator SeqSimilaritySearchSubHit.BySubjectStartComparator SequenceDBSearchHit SequenceDBSearchResult SequenceDBSearchSubHit SimpleSeqSimilaritySearchHit SimpleSeqSimilaritySearchResult SimpleSeqSimilaritySearchSubHit