Uses of Interface
org.biojava.bio.program.ssaha.SearchListener

Packages that use SearchListener

org.biojava.bio.program.ssaha

SSAHA sequence searching API.

Uses of SearchListener in org.biojava.bio.program.ssaha

Classes in org.biojava.bio.program.ssaha that implement SearchListener

class	HitMerger A listener that merges overlapping hits and culls all hits under a given length.
static class	SearchListener.Echo A SearchListener that prints events out to a PrintStream.
static class	SearchListener.FilterByLength A simple listener that filters out all hits that are too short.
static class	SearchListener.Tee A SearchListener that passes events on to two delegate listeners.
static class	SearchListener.Wrapper A simple wrapper implementation.

Methods in org.biojava.bio.program.ssaha with parameters of type SearchListener

void	DataStore.search(String id, SymbolList symList, SearchListener listener) Search the DataStore with a symbol list.
void	CompactedDataStore.search(String seqID, SymbolList symList, SearchListener listener)
void	CompactedDataStore.fireHits(int word, int offset, SearchListener listener)

Constructors in org.biojava.bio.program.ssaha with parameters of type SearchListener

SearchListener.Wrapper(SearchListener delegate)

SearchListener.Tee(SearchListener d1, SearchListener d2)

SearchListener.FilterByLength(SearchListener delegate, int minLength)

HitMerger(SearchListener delegate, int minLength)
Build a new HitMerger that will pass events on to a delegate.