org.biojava.bio.program.ssaha
Class SearchListener.FilterByLength

java.lang.Object
  org.biojava.bio.program.ssaha.SearchListener.Wrapper
      org.biojava.bio.program.ssaha.SearchListener.FilterByLength

All Implemented Interfaces:

SearchListener

Enclosing class:

SearchListener

public static final class SearchListener.FilterByLength

extends SearchListener.Wrapper

A simple listener that filters out all hits that are too short.

Since:

1.4

Author:

Matthew Pocock

Nested Class Summary

Nested classes inherited from class org.biojava.bio.program.ssaha.SearchListener

SearchListener.Echo, SearchListener.FilterByLength, SearchListener.Tee, SearchListener.Wrapper

Constructor Summary

SearchListener.FilterByLength(SearchListener delegate, int minLength)

Method Summary

void	hit(int hitID, int queryOffset, int hitOffset, int hitLength) There has been a hit between the query sequence and a database sequence.

Methods inherited from class org.biojava.bio.program.ssaha.SearchListener.Wrapper

endSearch, startSearch

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SearchListener.FilterByLength

public SearchListener.FilterByLength(SearchListener delegate,
                                     int minLength)

Method Detail

hit

public void hit(int hitID,
                int queryOffset,
                int hitOffset,
                int hitLength)

Description copied from interface: SearchListener

There has been a hit between the query sequence and a database sequence.

Specified by:

hit in interface SearchListener

Overrides:

hit in class SearchListener.Wrapper