Hierarchy For Package org.biojava.bio.program.homologene

Package Hierarchies:

All Packages

Class Hierarchy

• class java.lang.Object
  • class org.biojava.utils.AbstractChangeable (implements org.biojava.utils.Changeable)
    • class org.biojava.bio.program.homologene.AbstractOrthologueSet (implements org.biojava.bio.program.homologene.OrthologueSet)
      • class org.biojava.bio.program.homologene.SimpleOrthologueSet
    • class org.biojava.bio.program.homologene.AbstractOrthoPairSet (implements org.biojava.bio.program.homologene.OrthoPairSet)
      • class org.biojava.bio.program.homologene.SimpleOrthoPairSet
  • class org.biojava.bio.program.homologene.AbstractOrthoPairCollection (implements org.biojava.bio.program.homologene.OrthoPairCollection)
    • class org.biojava.bio.program.homologene.SimpleOrthoPairCollection
      • class org.biojava.bio.program.homologene.SimpleHomologeneDB (implements org.biojava.bio.program.homologene.HomologeneDB)
  • class org.biojava.bio.program.homologene.HomologeneTools
  • class org.biojava.bio.program.homologene.OrthologueFilter.AcceptAll (implements org.biojava.bio.program.homologene.OrthologueFilter)
  • class org.biojava.bio.program.homologene.OrthologueFilter.And (implements org.biojava.bio.program.homologene.OrthologueFilter)
  • class org.biojava.bio.program.homologene.OrthologueFilter.ByAccession (implements org.biojava.bio.program.homologene.OrthologueFilter)
  • class org.biojava.bio.program.homologene.OrthologueFilter.ByHomologeneID (implements org.biojava.bio.program.homologene.OrthologueFilter)
  • class org.biojava.bio.program.homologene.OrthologueFilter.ByLocusID (implements org.biojava.bio.program.homologene.OrthologueFilter)
  • class org.biojava.bio.program.homologene.OrthologueFilter.ByTaxon (implements org.biojava.bio.program.homologene.OrthologueFilter)
  • class org.biojava.bio.program.homologene.OrthologueFilter.ByTaxonID (implements org.biojava.bio.program.homologene.OrthologueFilter)
  • class org.biojava.bio.program.homologene.OrthologueFilter.ByTitle (implements org.biojava.bio.program.homologene.OrthologueFilter)
  • class org.biojava.bio.program.homologene.OrthologueFilter.Not (implements org.biojava.bio.program.homologene.OrthologueFilter)
  • class org.biojava.bio.program.homologene.OrthologueFilter.Or (implements org.biojava.bio.program.homologene.OrthologueFilter)
  • class org.biojava.bio.program.homologene.OrthologueFilter.Xor (implements org.biojava.bio.program.homologene.OrthologueFilter)
  • class org.biojava.bio.program.homologene.OrthoPairFilter.AcceptAll (implements org.biojava.bio.program.homologene.OrthoPairFilter)
  • class org.biojava.bio.program.homologene.OrthoPairFilter.And (implements org.biojava.bio.program.homologene.OrthoPairFilter)
  • class org.biojava.bio.program.homologene.OrthoPairFilter.ByMaxIdentity (implements org.biojava.bio.program.homologene.OrthoPairFilter)
  • class org.biojava.bio.program.homologene.OrthoPairFilter.ByMinIdentity (implements org.biojava.bio.program.homologene.OrthoPairFilter)
  • class org.biojava.bio.program.homologene.OrthoPairFilter.ByRef (implements org.biojava.bio.program.homologene.OrthoPairFilter)
  • class org.biojava.bio.program.homologene.OrthoPairFilter.BySimilarityType (implements org.biojava.bio.program.homologene.OrthoPairFilter)
  • class org.biojava.bio.program.homologene.OrthoPairFilter.Not (implements org.biojava.bio.program.homologene.OrthoPairFilter)
  • class org.biojava.bio.program.homologene.OrthoPairFilter.Or (implements org.biojava.bio.program.homologene.OrthoPairFilter)
  • class org.biojava.bio.program.homologene.OrthoPairFilter.Xor (implements org.biojava.bio.program.homologene.OrthoPairFilter)
  • class org.biojava.bio.program.homologene.OrthoPairSetFilter.AcceptAll (implements org.biojava.bio.program.homologene.OrthoPairSetFilter)
  • class org.biojava.bio.program.homologene.OrthoPairSetFilter.AllPairsInCollection (implements org.biojava.bio.program.homologene.OrthoPairSetFilter)
  • class org.biojava.bio.program.homologene.OrthoPairSetFilter.And (implements org.biojava.bio.program.homologene.OrthoPairSetFilter)
  • class org.biojava.bio.program.homologene.OrthoPairSetFilter.ByMinIdentity (implements org.biojava.bio.program.homologene.OrthoPairSetFilter)
  • class org.biojava.bio.program.homologene.OrthoPairSetFilter.ByTaxon (implements org.biojava.bio.program.homologene.OrthoPairSetFilter)
  • class org.biojava.bio.program.homologene.OrthoPairSetFilter.Not (implements org.biojava.bio.program.homologene.OrthoPairSetFilter)
  • class org.biojava.bio.program.homologene.OrthoPairSetFilter.Or (implements org.biojava.bio.program.homologene.OrthoPairSetFilter)
  • class org.biojava.bio.program.homologene.OrthoPairSetFilter.SomePairsInCollection (implements org.biojava.bio.program.homologene.OrthoPairSetFilter)
  • class org.biojava.bio.program.homologene.OrthoPairSetFilter.Xor (implements org.biojava.bio.program.homologene.OrthoPairSetFilter)
  • class org.biojava.bio.program.homologene.SimilarityType.PlaceHolder (implements org.biojava.bio.program.homologene.SimilarityType)
  • class org.biojava.bio.program.homologene.SimpleHomologeneBuilder (implements org.biojava.bio.program.homologene.HomologeneBuilder)
  • class org.biojava.bio.program.homologene.SimpleOrthologue (implements org.biojava.bio.program.homologene.Orthologue)
  • class org.biojava.bio.program.homologene.SimpleOrthologueSet.Iterator (implements org.biojava.bio.program.homologene.OrthologueSet.Iterator)
  • class org.biojava.bio.program.homologene.SimpleOrthoPair (implements org.biojava.bio.program.homologene.OrthoPair)
  • class org.biojava.bio.program.homologene.SimpleOrthoPairCollection.Iterator (implements org.biojava.bio.program.homologene.OrthoPairCollection.Iterator)
  • class org.biojava.bio.program.homologene.SimpleOrthoPairSet.Iterator (implements org.biojava.bio.program.homologene.OrthoPairSet.Iterator)
  • class org.biojava.bio.program.homologene.Taxon.TaxonStub (implements org.biojava.bio.program.homologene.Taxon)
  • class java.lang.Throwable (implements java.io.Serializable)
    • class java.lang.Exception
      • class org.biojava.bio.BioException
        • class org.biojava.bio.program.homologene.DuplicateTaxonException

Interface Hierarchy

• interface org.biojava.bio.program.homologene.HomologeneBuilder
• interface org.biojava.bio.program.homologene.HomologeneDB
• interface org.biojava.bio.program.homologene.Orthologue
• interface org.biojava.bio.program.homologene.OrthologueFilter
• interface org.biojava.bio.program.homologene.OrthologueSet
• interface org.biojava.bio.program.homologene.OrthologueSet.Iterator
• interface org.biojava.bio.program.homologene.OrthoPair
• interface org.biojava.bio.program.homologene.OrthoPairCollection
• interface org.biojava.bio.program.homologene.OrthoPairCollection.Iterator
• interface org.biojava.bio.program.homologene.OrthoPairFilter
• interface org.biojava.bio.program.homologene.OrthoPairSet
• interface org.biojava.bio.program.homologene.OrthoPairSet.Iterator
• interface org.biojava.bio.program.homologene.OrthoPairSetFilter
• interface org.biojava.bio.program.homologene.SimilarityType
• interface org.biojava.bio.program.homologene.Taxon