org.biojava.bio.program.homologene
Interface Orthologue

All Known Implementing Classes:

SimpleOrthologue

public interface Orthologue

this entry contains data about the orthologue.

Method Summary

String	getAccession() get the Accession ID associated with this orthologue.
String	getHomologeneID() get the Homologene ID.
String	getLocusID() get the locus ID associated with this orthologue.
Taxon	getTaxon() return the Taxon associated with this orthologue
int	getTaxonID() a convenience method to return the TaxonID for thsi orhtologue.
String	getTitle() return the title used by Genbank for this protein
void	setTitle(String title)

Method Detail

getTitle

public String getTitle()

return the title used by Genbank for this protein

getTaxon

public Taxon getTaxon()

return the Taxon associated with this orthologue

getTaxonID

public int getTaxonID()

a convenience method to return the TaxonID for thsi orhtologue.

getLocusID

public String getLocusID()

get the locus ID associated with this orthologue. It can be null.

getHomologeneID

public String getHomologeneID()

get the Homologene ID. This is unique and always defined.

getAccession

public String getAccession()

get the Accession ID associated with this orthologue.

setTitle

public void setTitle(String title)