org.biojava.bio.program.das.dasalignment
Class MSD_Mapping_ContentHandler

java.lang.Object
  org.xml.sax.helpers.DefaultHandler
      org.biojava.bio.program.das.dasalignment.MSD_Mapping_ContentHandler

All Implemented Interfaces:

ContentHandler, DTDHandler, EntityResolver, ErrorHandler

public class MSD_Mapping_ContentHandler

extends DefaultHandler

parse MSD-XMLmapping of uniprot - PDB file retunr Aligmnent object To change the template for this generated type comment go to Window - Preferences - Java - Code Generation - Code and Comments

Constructor Summary

MSD_Mapping_ContentHandler()

Method Summary

void	characters(char[] ch, int start, int length)
void	endDocument()
void	endElement(String uri, String name, String qName)
Alignment[]	get_alignments()
void	startDocument()
void	startElement(String uri, String name, String qName, Attributes atts)

Methods inherited from class org.xml.sax.helpers.DefaultHandler

endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, skippedEntity, startPrefixMapping, unparsedEntityDecl, warning

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MSD_Mapping_ContentHandler

public MSD_Mapping_ContentHandler()

Method Detail

startDocument

public void startDocument()

endDocument

public void endDocument()

endElement

public void endElement(String uri,
                       String name,
                       String qName)

characters

public void characters(char[] ch,
                       int start,
                       int length)

get_alignments

public Alignment[] get_alignments()

startElement

public void startElement(String uri,
                         String name,
                         String qName,
                         Attributes atts)