org.biojava.bio.program.das.dasalignment
Class MSDMappingReader

java.lang.Object
  org.biojava.bio.program.das.dasalignment.MSDMappingReader

public class MSDMappingReader

extends Object

parse a MSD mapping file from PDB to uniprot and return a DAS- Alignment object

Constructor Summary

MSDMappingReader()

Method Summary

Alignment[]

parseXMLFile(String filename)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MSDMappingReader

public MSDMappingReader()

Method Detail

parseXMLFile

public Alignment[] parseXMLFile(String filename)
                         throws ParserConfigurationException,
                                SAXException,
                                IOException

Throws:

ParserConfigurationException

SAXException

IOException