org.biojava.bio.program.das.dasalignment
Class DASAlignmentXMLResponseParser

java.lang.Object
  org.xml.sax.helpers.DefaultHandler
      org.biojava.bio.program.das.dasalignment.DASAlignmentXMLResponseParser

All Implemented Interfaces:

ContentHandler, DTDHandler, EntityResolver, ErrorHandler

public class DASAlignmentXMLResponseParser

extends DefaultHandler

a class to Parse the XML response of a DAS Alignment service returns an Alignment object

Constructor Summary

DASAlignmentXMLResponseParser()

Method Summary

void	characters(char[] ch, int start, int length)
void	endDocument()
void	endElement(String uri, String name, String qName)
Alignment	getAlignment(int position)
ArrayList	getAlignments()
void	startDocument()
void	startElement(String uri, String name, String qName, Attributes atts)

Methods inherited from class org.xml.sax.helpers.DefaultHandler

endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, skippedEntity, startPrefixMapping, unparsedEntityDecl, warning

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DASAlignmentXMLResponseParser

public DASAlignmentXMLResponseParser()

Method Detail

getAlignments

public ArrayList getAlignments()

getAlignment

public Alignment getAlignment(int position)

startElement

public void startElement(String uri,
                         String name,
                         String qName,
                         Attributes atts)

endElement

public void endElement(String uri,
                       String name,
                       String qName)

startDocument

public void startDocument()

endDocument

public void endDocument()

characters

public void characters(char[] ch,
                       int start,
                       int length)