org.biojava.bio.program.das.dasalignment
Class DASAlignmentClient

java.lang.Object
  org.biojava.bio.program.das.dasalignment.DASAlignmentClient

public class DASAlignmentClient

extends Object

A DAS client that connects to a DAS aligmnent service and returns a Biojava Alignment object.

Constructor Summary

DASAlignmentClient()

DASAlignmentClient(String url)

Method Summary

ArrayList	getAlignments()
ArrayList	getAlignments(String que)
String	getQuery()
void	setQuery(String q)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DASAlignmentClient

public DASAlignmentClient()

DASAlignmentClient

public DASAlignmentClient(String url)

Method Detail

setQuery

public void setQuery(String q)

getQuery

public String getQuery()

getAlignments

public ArrayList getAlignments(String que)
                        throws IOException

Throws:

IOException

getAlignments

public ArrayList getAlignments()
                        throws IOException

Throws:

IOException