org.biojava.bio.dp
Class BackPointer

java.lang.Object
  org.biojava.bio.dp.BackPointer

public class BackPointer

extends Object

A backpointer.

This is used to facilitate traceback after the Viterbi computation.

Author:

Matthew Pocock

Field Summary

BackPointer	back The previous backpointer (towards origin of DP matrix) in traceback.
double	score The score of this element of the DP matrix.
State	state The state with which this backpointer is associated.

Constructor Summary

BackPointer(State s)

BackPointer(State state, BackPointer back, double score)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

state

public final State state

The state with which this backpointer is associated.

back

public final BackPointer back

The previous backpointer (towards origin of DP matrix) in traceback.

score

public final double score

The score of this element of the DP matrix.

Constructor Detail

BackPointer

public BackPointer(State state,
                   BackPointer back,
                   double score)

BackPointer

public BackPointer(State s)