Uses of Interface
org.biojava.bio.symbol.GappedSymbolList

Packages that use GappedSymbolList

org.biojava.bio.alignment	Implementation of the Alignment interface.
org.biojava.bio.seq	Classes and interfaces for defining biological sequences and informatics objects.
org.biojava.bio.symbol	Representation of the Symbols that make up a sequence, and locations within them.

Uses of GappedSymbolList in org.biojava.bio.alignment

Methods in org.biojava.bio.alignment with parameters of type GappedSymbolList

void	FlexibleAlignment.removeGaps(GappedSymbolList seq, int start, int length) because there is a bug in GappedSymbolList

Uses of GappedSymbolList in org.biojava.bio.seq

Subinterfaces of GappedSymbolList in org.biojava.bio.seq

interface

GappedSequence Extension of GappedSymbolList which also projects features into the gapped coordinate system.

Classes in org.biojava.bio.seq that implement GappedSymbolList

class

SimpleGappedSequence Simple implementation of GappedSequence.

Uses of GappedSymbolList in org.biojava.bio.symbol

Classes in org.biojava.bio.symbol that implement GappedSymbolList

class

SimpleGappedSymbolList This implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps.