Uses of Interface
org.biojava.bio.seq.io.agave.StAXHandlerFactory

Packages that use StAXHandlerFactory

org.biojava.bio.seq.io.agave

Classes for converting between AGAVE XML and BioJava objects.

Uses of StAXHandlerFactory in org.biojava.bio.seq.io.agave

Fields in org.biojava.bio.seq.io.agave declared as StAXHandlerFactory

static StAXHandlerFactory	AGAVEFragmentOrderHandler.AGAVE_FRAGMENT_ORDER_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEAnnotationsHandler.AGAVE_ANNOTATIONS_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEMapLocationPropHandler.AGAVE_MAP_LOCATION_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEGeneHandler.AGAVE_GENE_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEComputationHandler.AGAVE_COMPUTATION_HANDLER_FACTORY
static StAXHandlerFactory	AGAVERelatedAnnotPropHandler.AGAVE_RELATED_ANNOT_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVESeqMapHandler.AGAVE_SEQ_MAP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVESeqFeatureHandler.AGAVE_SEQ_FEATURE_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEQueryRegionPropHandler.AGAVE_QUERY_REGION_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEAltIdsPropHandler.AGAVE_ALT_IDS_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEXrefPropHandler.AGAVE_XREF_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEResultPropertyPropHandler.AGAVE_RESULT_PROPERTY_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEBioSeqHandler.AGAVE_BIO_SEQ_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEMatchAlignPropHandler.AGAVE_MATCH_ALIGN_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEIdAliasPropHandler.AGAVE_ID_ALIAS_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVESeqLocationPropHandler.AGAVE_SEQ_LOCATION_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEResultGroupHandler.AGAVE_RESULT_GROUP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVETranscriptHandler.AGAVE_TRANSCRIPT_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEEvidenceHandler.AGAVE_EVIDENCE_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEContigHandler.AGAVE_CONTIG_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEClassificationHandler.AGAVE_CLASSIFICATION_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEElementIdPropHandler.AGAVE_ELEMENT_ID_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVESeqPropHandler.AGAVE_SEQ_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEMrnaHandler.AGAVE_MRNA_HANDLER_FACTORY
static StAXHandlerFactory	AGAVECompResultHandler.AGAVE_COMP_RESULT_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEBioSequenceHandler.AGAVE_BIO_SEQUENCE_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEXrefPropPropHandler.AGAVE_XREF_PROP_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEKeywordPropHandler.AGAVE_KEYWORD_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVECdsHandler.AGAVE_CDS_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEAssemblyHandler.AGAVE_ASSEMBLY_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEPredictedProteinHandler.AGAVE_PREDICTED_PROTEIN_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEMapPositionPropHandler.AGAVE_MAP_POSITION_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVENotePropHandler.AGAVE_NOTE_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEExonsPropHandler.AGAVE_EXONS_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEXrefsPropHandler.AGAVE_XREFS_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEUnorderedFragmentsHandler.AGAVE_UNORDERED_FRAGMENTS_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEDbIdPropHandler.AGAVE_DBID_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEFragmentOrientationHandler.AGAVE_FRAGMENT_ORIENTATION_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEViewPropHandler.AGAVE_VIEW_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEQualifierPropHandler.AGAVE_QUALIFIER_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEDescPropHandler.AGAVE_DESC_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVESciPropertyPropHandler.AGAVE_SCI_PROPERTY_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEMatchRegionPropHandler.AGAVE_MATCH_REGION_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEMatchDescPropHandler.AGAVE_MATCH_DESC_PROP_HANDLER_FACTORY
static StAXHandlerFactory	AGAVEChromosomeHandler.AGAVE_CHROMOSOME_HANDLER_FACTORY

Methods in org.biojava.bio.seq.io.agave with parameters of type StAXHandlerFactory

protected void	StAXPropertyHandler.addHandler(ElementRecognizer rec, StAXHandlerFactory handler)
protected void	StAXFeatureHandler.addHandler(ElementRecognizer rec, StAXHandlerFactory handler)