org.biojava.bio.seq.io.agave
Class AGAVESeqMapHandler

java.lang.Object
  |
  +--org.biojava.bio.seq.io.agave.StAXContentHandlerBase
        |
        +--org.biojava.bio.seq.io.agave.StAXFeatureHandler
              |
              +--org.biojava.bio.seq.io.agave.AGAVESeqMapHandler

All Implemented Interfaces:

StAXContentHandler

public class AGAVESeqMapHandler

extends StAXFeatureHandler

sequence_map

Author:

Hanning Ni Doubletwist Inc

Field Summary

static StAXHandlerFactory

AGAVE_SEQ_MAP_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler

annot, callbackStack, endLoc, featureListener, featureTemplate, myLocalName, stackLevel, startLoc, staxenv, subFeatures

Method Summary

void	startElementHandler(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs) Element-specific handler.

Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler

addFeatureToSequence, addHandler, createTemplate, endElement, endElementHandler, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_SEQ_MAP_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_SEQ_MAP_HANDLER_FACTORY

Method Detail

startElementHandler

public void startElementHandler(java.lang.String nsURI,
                                java.lang.String localName,
                                java.lang.String qName,
                                org.xml.sax.Attributes attrs)
                         throws org.xml.sax.SAXException

Description copied from class: StAXFeatureHandler

Element-specific handler. Subclass this to do something useful!

Overrides:

startElementHandler in class StAXFeatureHandler

org.xml.sax.SAXException