org.biojava.bio.seq.homol
Class SimilarityPairFeature.Template

java.lang.Object
  |
  +--org.biojava.bio.seq.Feature.Template
        |
        +--org.biojava.bio.seq.StrandedFeature.Template
              |
              +--org.biojava.bio.seq.homol.SimilarityPairFeature.Template

All Implemented Interfaces:

java.io.Serializable

Enclosing class:

SimilarityPairFeature

public static class SimilarityPairFeature.Template

extends StrandedFeature.Template

Template for construction of SimilarityPairFeatures.

See Also:

Serialized Form

Field Summary

Alignment	alignment alignment Alignment field.
double	score score of the search which produced the alignment.
SimilarityPairFeature	sibling sibling SimilarityPairFeature field.

Fields inherited from class org.biojava.bio.seq.StrandedFeature.Template

strand

Fields inherited from class org.biojava.bio.seq.Feature.Template

annotation, location, source, type

Constructor Summary

SimilarityPairFeature.Template()

Methods inherited from class org.biojava.bio.seq.Feature.Template

equals, hashCode, populate, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

sibling

public SimilarityPairFeature sibling

sibling SimilarityPairFeature field. May be null if the reciprocal SimilarityPairFeature has not yet been created.

alignment

public Alignment alignment

alignment Alignment field.

score

public double score

score of the search which produced the alignment.

Constructor Detail

SimilarityPairFeature.Template

public SimilarityPairFeature.Template()