org.biojava.bio.seq.db
Class GenpeptSequenceDB

java.lang.Object
  |
  +--org.biojava.bio.seq.db.GenpeptSequenceDB

public class GenpeptSequenceDB

extends java.lang.Object

Author:

Lei Lai, Matthew Pocock

Constructor Summary

GenpeptSequenceDB()

Method Summary

boolean	checkException()
boolean	checkIOException()
protected java.net.URL	getAddress(java.lang.String id)
protected java.net.URL	getAddress(java.lang.String id, java.lang.String format)
protected Alphabet	getAlphabet()
java.lang.String	getName()
Sequence	getSequence(java.lang.String id)
protected SequenceFormat	getSequenceFormat()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenpeptSequenceDB

public GenpeptSequenceDB()

Method Detail

getSequenceFormat

protected SequenceFormat getSequenceFormat()

getAlphabet

protected Alphabet getAlphabet()

getAddress

protected java.net.URL getAddress(java.lang.String id)
                           throws java.net.MalformedURLException

java.net.MalformedURLException

getAddress

protected java.net.URL getAddress(java.lang.String id,
                                  java.lang.String format)
                           throws java.net.MalformedURLException

java.net.MalformedURLException

getName

public java.lang.String getName()

getSequence

public Sequence getSequence(java.lang.String id)
                     throws BioException

BioException

checkIOException

public boolean checkIOException()

checkException

public boolean checkException()