org.biojava.bio.seq
Class FeatureFilter.AnnotationContains

java.lang.Object
  |
  +--org.biojava.bio.seq.FeatureFilter.ByAnnotationType
        |
        +--org.biojava.bio.seq.FeatureFilter.AnnotationContains

All Implemented Interfaces:

FeatureFilter, OptimizableFilter, java.io.Serializable

Enclosing class:

FeatureFilter

public static final class FeatureFilter.AnnotationContains

extends FeatureFilter.ByAnnotationType

Retrieve features that contain a given annotation, and that the set of values contains the value given.

Since:

1.3

Author:

Thomas Down

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biojava.bio.seq.FeatureFilter

FeatureFilter.And, FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySequenceName, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.Not, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.Or, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter

Field Summary

Fields inherited from interface org.biojava.bio.seq.FeatureFilter

all, leaf, none, top_level

Constructor Summary

FeatureFilter.AnnotationContains(java.lang.Object key, java.lang.Object value)
Make a new AnnotationContains that will accept features with an annotation bundle where the value-set assosiated with the property key contains a member equal to value.

Method Summary

java.lang.Object	getKey()
java.lang.Object	getValue()

Methods inherited from class org.biojava.bio.seq.FeatureFilter.ByAnnotationType

accept, equals, getType, hashCode, isDisjoint, isProperSubset, setType, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

FeatureFilter.AnnotationContains

public FeatureFilter.AnnotationContains(java.lang.Object key,
                                        java.lang.Object value)

Make a new AnnotationContains that will accept features with an annotation bundle where the value-set assosiated with the property key contains a member equal to value.

Parameters:

key - the Object used as a key in the annotation

value - the Object associated with key in the annotation

Method Detail

getKey

public java.lang.Object getKey()

getValue

public java.lang.Object getValue()