org.biojava.bio.program.ssbind
Class HSPSummaryStAXHandler

java.lang.Object
  |
  +--org.biojava.utils.stax.StAXContentHandlerBase
        |
        +--org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler
              |
              +--org.biojava.bio.program.ssbind.HSPSummaryStAXHandler

All Implemented Interfaces:

StAXContentHandler

public class HSPSummaryStAXHandler

extends SeqSimilarityStAXHandler

HSPSummaryStAXHandler handles the HSPSummary element of BioJava BlastLike XML.

Since:

1.3

Author:

Keith James

Field Summary

static StAXHandlerFactory

HSPSUMMARY_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

ssContext

Method Summary

protected void

handleStartElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs)

Methods inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

addHandler, endElement, handleEndElement, startElement

Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

HSPSUMMARY_HANDLER_FACTORY

public static final StAXHandlerFactory HSPSUMMARY_HANDLER_FACTORY

Method Detail

handleStartElement

protected void handleStartElement(java.lang.String nsURI,
                                  java.lang.String localName,
                                  java.lang.String qName,
                                  org.xml.sax.Attributes attrs)
                           throws org.xml.sax.SAXException

Overrides:

handleStartElement in class SeqSimilarityStAXHandler

org.xml.sax.SAXException