org.biojava.bio.program.gff
Class GFFRecordFilter.FeatureFilter

java.lang.Object
  |
  +--org.biojava.bio.program.gff.GFFRecordFilter.FeatureFilter

All Implemented Interfaces:

GFFRecordFilter

Enclosing class:

GFFRecordFilter

public static class GFFRecordFilter.FeatureFilter

extends java.lang.Object

implements GFFRecordFilter

Implementation of GFFRecordFilter that accepts records based upon the feature field.

Author:

Matthew Pocock

Nested Class Summary

Nested classes inherited from class org.biojava.bio.program.gff.GFFRecordFilter

GFFRecordFilter.AcceptAll, GFFRecordFilter.FeatureFilter, GFFRecordFilter.FrameFilter, GFFRecordFilter.NotFilter, GFFRecordFilter.SequenceFilter, GFFRecordFilter.SourceFilter, GFFRecordFilter.StrandFilter

Field Summary

Fields inherited from interface org.biojava.bio.program.gff.GFFRecordFilter

ACCEPT_ALL

Constructor Summary

GFFRecordFilter.FeatureFilter()

GFFRecordFilter.FeatureFilter(java.lang.String feature)

Method Summary

boolean	accept(GFFRecord record) Return whether or not to accept record.
java.lang.String	getFeature() Retrieve the current feature.
void	setFeature(java.lang.String feature) Set the feature to feature.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GFFRecordFilter.FeatureFilter

public GFFRecordFilter.FeatureFilter()

GFFRecordFilter.FeatureFilter

public GFFRecordFilter.FeatureFilter(java.lang.String feature)

Method Detail

setFeature

public void setFeature(java.lang.String feature)

Set the feature to feature.

getFeature

public java.lang.String getFeature()

Retrieve the current feature.

Returns:

the feature String

accept

public boolean accept(GFFRecord record)

Description copied from interface: GFFRecordFilter

Return whether or not to accept record.

Specified by:

accept in interface GFFRecordFilter

Returns:

record. getFeature() == this.getFeature()