Uses of Package
org.biojava.bio.program.blast2html

Packages that use org.biojava.bio.program.blast2html

org.biojava.bio.program.blast2html

Code for generating HTML reports from blast output

Classes in org.biojava.bio.program.blast2html used by org.biojava.bio.program.blast2html

AbstractAlignmentStyler
Abstract implementation of AlignmentStyler, contains utility methods for generating a set of HTML styles from a list of RGB colours.

AlignmentMarker
Class to do simple HTML colouring of sequence alignments.

ColourCommand
Interface for specifying whether a particular pair of residues/bases should be coloured.

DatabaseURLGenerator
Takes a database ID and some configuration properties ( such as base URL ) and returns either a URL or a full anchor tag.

HTMLRenderer
Renders HTML version of blast-like output.

URLGeneratorFactory
Interface for a factory method to return a list of 0, 1 or more DatabaseURLGenerator instances.