org.biojava.bio.gui.sequence
Class SixFrameZiggyRenderer

java.lang.Object
  |
  +--org.biojava.utils.AbstractChangeable
        |
        +--org.biojava.bio.gui.sequence.SixFrameZiggyRenderer

All Implemented Interfaces:

Changeable, FeatureRenderer, java.io.Serializable

public class SixFrameZiggyRenderer

extends AbstractChangeable

implements FeatureRenderer, java.io.Serializable

A feature renderer that computes the data necessary to render multi-exon transcripts without CDS data.

The actual drawing is done by a child renderer. In this case, SixFrameRenderer is used, which can use data from this renderer to display transcripts in the correct translation frames.

Author:

David Huen

See Also:

Serialized Form

Constructor Summary

SixFrameZiggyRenderer(SixFrameRenderer pane)

Method Summary

double	getBlockDepth()
double	getDepth(SequenceRenderContext src)
java.awt.Paint	getFill()
java.awt.Paint	getOutline()
FeatureHolder	processMouseEvent(FeatureHolder hits, SequenceRenderContext src, java.awt.event.MouseEvent me)
void	renderFeature(java.awt.Graphics2D g, Feature f, SequenceRenderContext context)
void	setBlockDepth(double depth)
void	setFill(java.awt.Paint p)
void	setOutline(java.awt.Paint p)

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SixFrameZiggyRenderer

public SixFrameZiggyRenderer(SixFrameRenderer pane)

Method Detail

setFill

public void setFill(java.awt.Paint p)
             throws ChangeVetoException

ChangeVetoException

getFill

public java.awt.Paint getFill()

setOutline

public void setOutline(java.awt.Paint p)
                throws ChangeVetoException

ChangeVetoException

getOutline

public java.awt.Paint getOutline()

setBlockDepth

public void setBlockDepth(double depth)
                   throws ChangeVetoException

ChangeVetoException

getBlockDepth

public double getBlockDepth()

getDepth

public double getDepth(SequenceRenderContext src)

Specified by:

getDepth in interface FeatureRenderer

renderFeature

public void renderFeature(java.awt.Graphics2D g,
                          Feature f,
                          SequenceRenderContext context)

Specified by:

renderFeature in interface FeatureRenderer

processMouseEvent

public FeatureHolder processMouseEvent(FeatureHolder hits,
                                       SequenceRenderContext src,
                                       java.awt.event.MouseEvent me)

Specified by:

processMouseEvent in interface FeatureRenderer