Uses of Package
org.biojava.bio.dp.twohead

Packages that use org.biojava.bio.dp.twohead

org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.
org.biojava.bio.dp.twohead

Classes in org.biojava.bio.dp.twohead used by org.biojava.bio.dp

CellCalculatorFactoryMaker
The interface for all functions that can calculate the 'scores' array for a given cell.

Classes in org.biojava.bio.dp.twohead used by org.biojava.bio.dp.twohead

AbstractMatrixPairDPCursor

Cell
A single cell in the DP matrix.

CellCalculator
The interface for all functions that can calculate the 'scores' array for a given cell.

CellCalculatorFactory

CellCalculatorFactoryMaker
The interface for all functions that can calculate the 'scores' array for a given cell.

EmissionCache
Cache for columns of emission probabilities in pair-wise alignment algorithms.

PairDPCursor
A cursor over a DP matrix.

PairDPMatrix
Storage structure for intermediate values from a pairwise dynamic programming run.