org.biojava.bio.dp.twohead
Interface CellCalculatorFactory

All Known Implementing Classes:

DPInterpreter

public interface CellCalculatorFactory

Author:

Matthew Pocock

Method Summary

CellCalculator	backwards(ScoreType scoreType)
CellCalculator	forwards(ScoreType scoreType)
CellCalculator	viterbi(ScoreType scoreType, BackPointer terminal)

Method Detail

forwards

public CellCalculator forwards(ScoreType scoreType)
                        throws IllegalSymbolException,
                               IllegalAlphabetException,
                               IllegalTransitionException

IllegalSymbolException

IllegalAlphabetException

IllegalTransitionException

backwards

public CellCalculator backwards(ScoreType scoreType)
                         throws IllegalSymbolException,
                                IllegalAlphabetException,
                                IllegalTransitionException

IllegalSymbolException

IllegalAlphabetException

IllegalTransitionException

viterbi

public CellCalculator viterbi(ScoreType scoreType,
                              BackPointer terminal)
                       throws IllegalSymbolException,
                              IllegalAlphabetException,
                              IllegalTransitionException

IllegalSymbolException

IllegalAlphabetException

IllegalTransitionException