org.biojava.bio.dp
Class SimpleModelTrainer

java.lang.Object
  |
  +--org.biojava.bio.dist.SimpleDistributionTrainerContext
        |
        +--org.biojava.bio.dp.SimpleModelTrainer

All Implemented Interfaces:

DistributionTrainerContext, ModelTrainer, java.io.Serializable

public class SimpleModelTrainer

extends SimpleDistributionTrainerContext

implements ModelTrainer, java.io.Serializable

Author:

Matthew Pocock, Thomas Down

See Also:

Serialized Form

Constructor Summary

SimpleModelTrainer()

Method Summary

void	registerModel(MarkovModel model) Registers an HMM with this trainer.

Methods inherited from class org.biojava.bio.dist.SimpleDistributionTrainerContext

addCount, clearCounts, getCount, getNullModelWeight, getTrainer, registerDistribution, registerTrainer, setNullModelWeight, train

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.bio.dist.DistributionTrainerContext

addCount, clearCounts, getCount, getNullModelWeight, getTrainer, registerDistribution, registerTrainer, setNullModelWeight, train

Constructor Detail

SimpleModelTrainer

public SimpleModelTrainer()

Method Detail

registerModel

public void registerModel(MarkovModel model)

Description copied from interface: ModelTrainer

Registers an HMM with this trainer.

If the model has been already registered, then this method should do nothing. If it has not been registered, then this method should loop over every state in the model and register the Distribution returned by getWeight.

Specified by:

registerModel in interface ModelTrainer

Parameters:

model - the MarkovModel to train