org.biojava.bio.dp
Class ScoreType.Probability

java.lang.Object
  |
  +--org.biojava.bio.dp.ScoreType.Probability

All Implemented Interfaces:

ScoreType

Enclosing class:

ScoreType

public static class ScoreType.Probability

extends java.lang.Object

implements ScoreType

In this class, calculateScore returns the probability of a Symbol being emitted.

Author:

Matthew Pocock

Nested Class Summary

Nested classes inherited from class org.biojava.bio.dp.ScoreType

ScoreType.NullModel, ScoreType.Odds, ScoreType.Probability

Field Summary

Fields inherited from interface org.biojava.bio.dp.ScoreType

NULL_MODEL, ODDS, PROBABILITY

Constructor Summary

ScoreType.Probability()

Method Summary

double

calculateScore(Distribution dist, Symbol sym) Calculates the score associated with a distribution and a symbol.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ScoreType.Probability

public ScoreType.Probability()

Method Detail

calculateScore

public double calculateScore(Distribution dist,
                             Symbol sym)
                      throws IllegalSymbolException

Description copied from interface: ScoreType

Calculates the score associated with a distribution and a symbol.

Specified by:

calculateScore in interface ScoreType

IllegalSymbolException