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| Packages that use org.biojava.bio.dist | |
| org.biojava.bio.dist | Probability distributions over Alphabets. |
| org.biojava.bio.dp | HMM and Dynamic Programming Algorithms. |
| org.biojava.bio.gui | Graphical interfaces for biojava objects. |
| org.biojava.bio.program.hmmer | Tools for working with profile Hidden Markov Models from the HMMer package. |
| org.biojava.bio.program.phred | Parser for Phred output |
Classes in org.biojava.bio.dist used by org.biojava.bio.dist| AbstractDistribution
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An abstract implementation of Distribution. Count
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An encapsulation of a count over the Symbols within an alphabet. Distribution
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An encapsulation of a probability distribution over the Symbols within an alphabet. Distribution.NullModelForwarder
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This listens to the null model distribution events and converts them into NULL_MODEL events. DistributionFactory
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A thing that can make Distributions. DistributionTrainer
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An object that can be used to train a distribution up. DistributionTrainerContext
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A context within a group of DistributionTrainers can be trained together. IgnoreCountsTrainer
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A distribution trainer that just ignores all counts. OrderNDistribution
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Provides an N'th order distribution. SimpleDistribution
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A simple implementation of a distribution, which works with any finite alphabet. |
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Classes in org.biojava.bio.dist used by org.biojava.bio.dp| Distribution
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An encapsulation of a probability distribution over the Symbols within an alphabet. DistributionFactory
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A thing that can make Distributions. DistributionTrainerContext
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A context within a group of DistributionTrainers can be trained together. SimpleDistributionTrainerContext
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A no-frills implementation of DistributionTrainerContext. |
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Classes in org.biojava.bio.dist used by org.biojava.bio.gui| Distribution
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An encapsulation of a probability distribution over the Symbols within an alphabet. |
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Classes in org.biojava.bio.dist used by org.biojava.bio.program.hmmer| Distribution
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An encapsulation of a probability distribution over the Symbols within an alphabet. DistributionFactory
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A thing that can make Distributions. |
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Classes in org.biojava.bio.dist used by org.biojava.bio.program.phred| Distribution
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An encapsulation of a probability distribution over the Symbols within an alphabet. |
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