org.biojava.bio.dist
Class UntrainableDistribution

java.lang.Object
  |
  +--org.biojava.utils.AbstractChangeable
        |
        +--org.biojava.bio.dist.AbstractDistribution
              |
              +--org.biojava.bio.dist.SimpleDistribution
                    |
                    +--org.biojava.bio.dist.UntrainableDistribution

All Implemented Interfaces:

Changeable, Distribution, java.io.Serializable

public class UntrainableDistribution

extends SimpleDistribution

A distribution which does not interact with the training framework. This class behaves in exactly the same manner as SimpleDistribution, except that it has a no-op registerWithTrainer method. It is useful for building Markov models where you wish to train only a subset of the Distributions.

Since:

1.3

Author:

Thomas Down

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biojava.bio.dist.SimpleDistribution

SimpleDistribution.Trainer

Nested classes inherited from class org.biojava.bio.dist.Distribution

Distribution.NullModelForwarder

Field Summary

Fields inherited from class org.biojava.bio.dist.AbstractDistribution

nullModelForwarder, symbolIndices

Fields inherited from interface org.biojava.bio.dist.Distribution

NULL_MODEL, WEIGHTS

Constructor Summary

UntrainableDistribution(FiniteAlphabet alpha)
Construct a new untrainable distribution over the specified alphabet

Method Summary

void	registerWithTrainer(DistributionTrainerContext dtc) Dummy implementation which registers an IgnoreCountsTrainer.

Methods inherited from class org.biojava.bio.dist.SimpleDistribution

getAlphabet, getNullModel, getWeightImpl, getWeights, hasWeights, setNullModelImpl, setWeightImpl

Methods inherited from class org.biojava.bio.dist.AbstractDistribution

getChangeSupport, getWeight, sampleSymbol, setNullModel, setWeight

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Constructor Detail

UntrainableDistribution

public UntrainableDistribution(FiniteAlphabet alpha)

Construct a new untrainable distribution over the specified alphabet

Method Detail

registerWithTrainer

public void registerWithTrainer(DistributionTrainerContext dtc)

Dummy implementation which registers an IgnoreCountsTrainer.

Specified by:

registerWithTrainer in interface Distribution

Overrides:

registerWithTrainer in class SimpleDistribution

Parameters:

dtc - the DistributionTrainerContext with witch to register a trainer