Uses of Package
org.biojava.bio.alignment

Packages that use org.biojava.bio.alignment

org.biojava.bio.alignment

Implementation of the Alignment interface.

Classes in org.biojava.bio.alignment used by org.biojava.bio.alignment

AbstractULAlignment

AlignmentElement
AlignmentElement is a class which represents a SymbolList and its location within an Alignment This is for use in UnequalLengthAlignments and ARAlignments.

ARAlignment
ARAlignment is an interface that defines methods for adding and removing seqeunces from an Alignment.

EditableAlignment
EditableAlignment is an interface that defines methods for shifting bases within an Alignment.

IllegalAlignmentEditException
The usual reason for throwing an IllegalAlignmentEditException is that you are trying to shift a group of bases in such a way that it would require deleting bases.

UnequalLengthAlignment
UnequalLengthAlignment has the following behavior.