Uses of Interface
org.biojava.bio.alignment.AlignmentElement

Packages that use AlignmentElement

org.biojava.bio.alignment

Implementation of the Alignment interface.

Uses of AlignmentElement in org.biojava.bio.alignment

Classes in org.biojava.bio.alignment that implement AlignmentElement

class

SimpleAlignmentElement SimpleSimpleAlignment is a simple implementation of AlignmentElement.

Methods in org.biojava.bio.alignment that return AlignmentElement

protected AlignmentElement

FlexibleAlignment.getAE(java.lang.Object label)

Methods in org.biojava.bio.alignment with parameters of type AlignmentElement

void	ARAlignment.addSequence(AlignmentElement ae)
void	FlexibleAlignment.addSequence(AlignmentElement ae) add a new a alignment usings a location to the reference sequence.