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## Uses of Interface
baseCode.util.StatusViewer

Packages that use StatusViewer
baseCode.bio.geneset |
baseCode.gui |
baseCode.util |

Uses of StatusViewer in baseCode.bio.geneset

Methods in baseCode.bio.geneset with parameters of type StatusViewer
`static void` | `GeneSetMapTools.removeAspect(GeneAnnotations ga, GONames gon, StatusViewer messenger, java.lang.String aspect)`
`static void` | `GeneSetMapTools.removeBySize(GeneAnnotations ga, StatusViewer messenger, int minClassSize, int maxClassSize)` Remove gene sets that don't meet certain criteria.
`static void` | `GeneSetMapTools.ignoreSimilar(double fractionSameThreshold, GeneAnnotations ga, StatusViewer messenger, int maxClassSize, int minClassSize, double bigClassPenalty)` Remove classes which are too similar to some other class.
`static void` | `GeneSetMapTools.collapseGeneSets(GeneAnnotations geneData, StatusViewer messenger)` Identify classes which are absoluely identical to others.

Constructors in baseCode.bio.geneset with parameters of type StatusViewer
`GeneAnnotations(java.lang.String filename, StatusViewer messenger)` This is for creating GeneAnnotations by reading from a file
`GeneAnnotations(java.io.InputStream stream, java.util.Set activeGenes, StatusViewer messenger)` Make a new GeneAnnotations that only includes the probes in the parameter 'probes'.
`GeneAnnotations(java.lang.String fileName, java.util.Set activeGenes, StatusViewer messenger)`

Uses of StatusViewer in baseCode.gui

Classes in baseCode.gui that implement StatusViewer
`class` | `StatusJlabel` Title:

Uses of StatusViewer in baseCode.util

Classes in baseCode.util that implement StatusViewer
`class` | `StatusDebugLogger` Copyright (c) 2004 Columbia University
`class` | `StatusStderr` Prints status info to stderr

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