Clover coverage report - baseCode - 0.2.5 Coverage timestamp: Tue Apr 12 2005 11:31:58 EDT FRAMES NO FRAMES |
file stats: | LOC: | 92 |  | Methods: | 7
| NCLOC: | 43 |  | Classes: | 1
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Source file | Conditionals | Statements | Methods | TOTAL
AbstractLevelFilter.java | 75% | 81.2% | 85.7% | 81.5% |

1 |  |
     package baseCode.dataFilter;
2 |  |
3 |  |
     import baseCode.math.Stats;
4 |  |
5 |  |
     /**
6 |  |
      * Abstract class representing a filter that removes things from matrices based on the values themselves. Copyright (c)
7 |  |
      * 2004 Columbia University
8 |  |
      *
9 |  |
      * @author Owner
10 |  |
      * @version $Id: AbstractLevelFilter.java,v 1.3 2004/07/27 03:18:58 pavlidis Exp $
11 |  |
      */
12 |  |
     public abstract class AbstractLevelFilter extends AbstractFilter {
13 |  |
14 |  |
        protected double lowCut = -Double.MAX_VALUE;
15 |  |
        protected double highCut = Double.MAX_VALUE;
16 |  |
        protected boolean useLowAsFraction = false;
17 |  |
        protected boolean useHighAsFraction = false;
18 |  |
19 |  |
        /**
20 |  |
         * Set the low threshold for removal.
21 |  |
         *
22 |  |
         * @param lowCut the threshold
23 |  |
         */
24 | 17 |
        public void setLowCut( double lowCut ) {
25 | 17 |
           this.lowCut = lowCut;
26 |  |
        }
27 |  |
28 |  |
        /**
29 |  |
         * @param lowCut
30 |  |
         * @param isFraction
31 |  |
         */
32 | 16 |
        public void setLowCut( double lowCut, boolean isFraction ) {
33 | 16 |
           setLowCut( lowCut );
34 | 16 |
           setUseLowCutAsFraction( isFraction );
35 | 15 |
           useLowAsFraction = isFraction;
36 |  |
        }
37 |  |
38 |  |
        /**
39 |  |
         * Set the high threshold for removal. If not set, no filtering will occur.
40 |  |
         *
41 |  |
         * @param h the threshold
42 |  |
         */
43 | 11 |
        public void setHighCut( double h ) {
44 | 11 |
           highCut = h;
45 |  |
        }
46 |  |
47 |  |
        /**
48 |  |
         * @param highCut
49 |  |
         * @param isFraction
50 |  |
         */
51 | 11 |
        public void setHighCut( double highCut, boolean isFraction ) {
52 | 11 |
           setHighCut( highCut );
53 | 11 |
           setUseHighCutAsFraction( isFraction );
54 | 11 |
           useHighAsFraction = isFraction;
55 |  |
        }
56 |  |
57 |  |
        /**
58 |  |
         * @param setting
59 |  |
         */
60 | 11 |
        public void setUseHighCutAsFraction( boolean setting ) {
61 | 11 |
           if ( setting == true && !Stats.isValidFraction( highCut ) ) {
62 | 0 |
              throw new IllegalArgumentException(
63 |  |
                    "Value for cut(s) are invalid for using "
64 |  |
                          + "as fractions, must be >0.0 and <1.0," );
65 |  |
           }
66 | 11 |
           useHighAsFraction = setting;
67 |  |
        }
68 |  |
69 |  |
        /**
70 |  |
         * @param setting
71 |  |
         */
72 | 16 |
        public void setUseLowCutAsFraction( boolean setting ) {
73 | 16 |
           if ( setting == true && !Stats.isValidFraction( lowCut ) ) {
74 | 1 |
              throw new IllegalArgumentException(
75 |  |
                    "Value for cut(s) are invalid for using "
76 |  |
                          + "as fractions, must be >0.0 and <1.0," );
77 |  |
           }
78 | 15 |
           useLowAsFraction = setting;
79 |  |
        }
80 |  |
81 |  |
        /**
82 |  |
         * Set the filter to interpret the low and high cuts as fractions; that is, if true, lowcut 0.1 means remove 0.1 of
83 |  |
         * the rows with the lowest values. Otherwise the cuts are interpeted as actual values. Default = false.
84 |  |
         *
85 |  |
         * @param setting boolean
86 |  |
         */
87 | 0 |
        public void setUseAsFraction( boolean setting ) {
88 | 0 |
           setUseHighCutAsFraction( setting );
89 | 0 |
           setUseLowCutAsFraction( setting );
90 |  |
        }
91 |  |
92 |  |
     }