Summary

[ summary] [ package list] [ test cases]

Note: failuresare anticipated and checked for with assertions while errorsare unanticipated.

Package List

[ summary] [ package list] [ test cases]

Note: package statistics are not computed recursively, they only sum up all of its testsuites numbers.

baseCode.dataFilter

Class		Tests	Errors	Failures	Success Rate	Time
	TestItemLevelFilter	1	0	0	100.00%	0.585
	TestRowAbsentFilter	9	0	0	100.00%	0.720
	TestRowAffyNameFilter	2	0	0	100.00%	0.604
	TestRowLevelFilter	23	0	0	100.00%	0.826
	TestRowMissingFilter	11	0	0	100.00%	0.712
	TestRowNameFilter	4	0	0	100.00%	0.626

baseCode.dataStructure.graph

Class		Tests	Errors	Failures	Success Rate	Time
	TestDirectedGraph	3	0	0	100.00%	0.405

baseCode.dataStructure

Class		Tests	Errors	Failures	Success Rate	Time
	TestQueue	4	0	0	100.00%	0.414
	TestStack	5	0	0	100.00%	0.412

baseCode.dataStructure.matrix

Class		Tests	Errors	Failures	Success Rate	Time
	TestRCDoubleMatrix1D	6	0	0	100.00%	0.452
	TestSparseRaggedDoubleMatrix2DNamed	5	0	0	100.00%	0.571

baseCode.io.reader

Class		Tests	Errors	Failures	Success Rate	Time
	TestDoubleMatrixReader	6	0	0	100.00%	0.584
	TestMapReader	2	0	0	100.00%	0.414
	TestSparseDoubleMatrixReader	2	0	0	100.00%	0.603
	TestSparseRaggedDouble2DNamedMatrixReader	3	0	0	100.00%	2.959
	TestStringMatrixReader	4	0	0	100.00%	0.521

baseCode.io

Class		Tests	Errors	Failures	Success Rate	Time
	TestByteArrayConverter	6	0	0	100.00%	24.732
	TestStringConverter	2	0	0	100.00%	0.409

baseCode.io.writer

Class		Tests	Errors	Failures	Success Rate	Time
	TestHistogramWriter	1	0	0	100.00%	0.427

baseCode.math.distribution

Class		Tests	Errors	Failures	Success Rate	Time
	TestWishart	1	0	0	100.00%	0.484

baseCode.math

Class		Tests	Errors	Failures	Success Rate	Time
	TestCorrelationStats	9	0	0	100.00%	0.407
	TestDescriptiveWithMissing	20	0	0	100.00%	0.444
	TestKSTest	2	0	0	100.00%	0.437
	TestMatrixRowStats	5	0	0	100.00%	0.599
	TestMatrixStats	4	0	0	100.00%	0.643
	TestROC	2	0	0	100.00%	0.430
	TestRank	3	0	0	100.00%	0.452
	TestSpecFunc	4	0	0	100.00%	0.425
	TestStats	12	0	0	100.00%	0.485

baseCode.math.metaanalysis

Class		Tests	Errors	Failures	Success Rate	Time
	TestCorrelationEffectMetaAnalysis	9	0	0	100.00%	0.542
	TestMeanDifferenceMetaAnalysis	8	0	0	100.00%	0.484

baseCode.xml

Class		Tests	Errors	Failures	Success Rate	Time
	TestGOParser	1	0	0	100.00%	0.759

Test Cases

[ summary] [ package list] [ test cases]

TestItemLevelFilter

testFilter

0.19

TestRowAbsentFilter

	testFilter	0.20
	testFilterWithMissing	0.02
	testFilterWithMissingLessStringent	0.02
	testFilterStringMatrix	0.02
	testFilterKeepMarginal	0.02
	testFilterFraction	0.01
	testFilterFractionInvalid	0.01
	testFilterPresentCountInvalid	0.01
	testFilterNullFlags	0.01

TestRowAffyNameFilter

	testFilter	0.18
	testStringFilter	0.02

TestRowLevelFilter

	testFilterMax	0.19
	testFilterMaxTooHigh	0.02
	testFilterMin	0.02
	testFilterMean	0.02
	testFilterMedian	0.01
	testFilterMaxFraction	0.01
	testFilterMaxFractionAll	0.01
	testFilterMaxFractionNone	0.01
	testFilterMaxFractionNoneRemoveNeg	0.01
	testFilterFractionMaxRemoveNeg	0.01
	testFilterBadFraction	0.01
	testFilterNoFilter	0.01
	testFilterMaxHigh	0.01
	testFilterMinHigh	0.01
	testFilterMeanHigh	0.01
	testFilterMedianHigh	0.01
	testFilterMaxFractionHigh	0.01
	testFilterFractionMaxRemoveNegHigh	0.01
	testFilterFractionMaxRemoveHighAndLow	0.01
	testFilterFractionMaxRemoveHighAndLowBothFraction	0.01
	testFilterFractionMaxRemoveHighAndLowBothLevels	0.01
	testFilterFractionMaxRemoveHighAndLowBothLevelsNoNegRemove	0.01
	testFilterFractionMaxRemoveHighAndLowBothLevelsNegLow	0.01

TestRowMissingFilter

	testFilter	0.19
	testFilterNoFiltering	0.02
	testFilterWithMissing	0.02
	testFilterWithMissingLowMaxFraction	0.01
	testFilterWithMissingLessStringent	0.02
	testFilterStringMatrix	0.01
	testFilterFraction	0.01
	testFilterFractionInvalid	0.01
	testFilterFractionInvalid2	0.01
	testMaxFractionRemovedInvalid	0.01
	testFilterPresentCountInvalid	0.01

TestRowNameFilter

	testFilter	0.18
	testFilterExclude	0.02
	testFilterString	0.02
	testFilterStringExclude	0.01

TestDirectedGraph

	testToString	0.01
	testTopoSort	0.00
	testGetChildren	0.00

TestQueue

	testEnqueue	0.01
	testDequeue	0.00
	testEmptyDequeue	0.00
	testFullEnqueue	0.00

TestStack

	testPop	0.01
	testPush	0.00
	testTop	0.00
	testEmptyPop	0.00
	testFullPush	0.00

TestRCDoubleMatrix1D

	testForEachNonZero	0.05
	testZDotProductDoubleMatrix1D	0.00
	testZDotProductDoubleMatrix1DReverse	0.00
	testZDotProductDoubleMatrix1DHarder	0.00
	testZDotProductDoubleMatrix1DHarderReverse	0.00
	testAssignDoubleFunction	0.00

TestSparseRaggedDoubleMatrix2DNamed

	testRows	0.15
	testColumns	0.00
	testGetRowArrayList	0.01
	testGetRowMatrix1D	0.01
	testGetRow	0.00

TestDoubleMatrixReader

	testReadInputStreamMissing	0.13
	testReadInputStreamMissingBad	0.00
	testReadInputStreamRowCount	0.02
	testReadInputStreamColumnCount	0.00
	testReadInputStreamGotRowName	0.00
	testReadInputStreamGotColName	0.01

TestMapReader

	testRead	0.02
	testReadNoHeader	0.00

TestSparseDoubleMatrixReader

	testReadStream	0.15
	testReadJW	0.06

TestSparseRaggedDouble2DNamedMatrixReader

	testReadInputStream	0.16
	testReadStreamAdjList	0.01
	testReadStreamAdjListBig	2.39

TestStringMatrixReader

	testReadInputStreamRowCount	0.10
	testReadInputStreamColumnCount	0.01
	testReadInputStreamGotRowName	0.01
	testReadInputStreamGotColName	0.00

TestByteArrayConverter

	testDoubleArrayToBytes	2.94
	testByteArrayToDoubles	2.61
	testByteArrayToDoubleConversionSpeed	3.61
	testStringToDoubleArrayConversionSpeed	6.14
	testDoubleArrayToByteArrayConversionSpeed	3.16
	testDoubleArrayToDelimitedStringConversionSpeed	5.87

TestStringConverter

	testStringToBytes	0.01
	testStringToDoubles	0.00

TestHistogramWriter

testWriter

0.02

TestWishart

testNextDoubleMatrix

0.08

TestCorrelationStats

	testPvalue	0.00
	testCorrelAsByte	0.00
	testFisherTransform	0.00
	testPvalueAsByte	0.00
	testByteToPvalue	0.00
	testByteToCorrel	0.00
	testCorrelationTstat	0.00
	testCompare	0.00
	testCorrelationForPvalue	0.00

TestDescriptiveWithMissing

	testCorrelationA	0.03
	testCorrelationB	0.00
	testCovariance	0.00
	testDurbinWatson	0.00
	testDurbinWatsonTwo	0.00
	testDurbinWatsonShort	0.00
	testGeometricMean	0.00
	testMean	0.00
	testMin	0.00
	testMax	0.00
	testMedian	0.00
	testProduct	0.00
	testSampleKurtosis	0.00
	testQuantile	0.00
	testSum	0.00
	testSumOfSquares	0.00
	testSampleVariance	0.00
	testStandardize	0.01
	testTrimmedMean	0.00
	testVariance	0.00

TestKSTest

	testKSTestTwoSample	0.04
	testKSTestOneSample	0.00

TestMatrixRowStats

	testSumOfSquaresDenseDoubleMatrix2DNamed	0.16
	testSumOfSquaresDenseDoubleMatrix2DNamedDoubleArrayList	0.01
	testMeans	0.00
	testSums	0.01
	testStandardDeviations	0.01

TestMatrixStats

	testMin	0.14
	testMax	0.02
	testCorrelationMatrix	0.04
	testRbfNormalize	0.05

TestROC

	testAroc	0.03
	testArocN	0.00

TestRank

	testRankTransformDoubleArrayList	0.04
	testRankTransformMap	0.00
	testRankTransformBadMap	0.00

TestSpecFunc

	testHypergeometric	0.01
	testCumHyperGeometric	0.00
	testCumHyperGeometricUT	0.00
	testdBinom	0.00

TestStats

	testIsValidFraction	0.03
	testIsValidFraction2	0.00
	testCv	0.01
	testCumulate	0.01
	testCumulateRight	0.00
	testCdf	0.00
	testNormalizeDoubleArrayListdouble	0.00
	testNormalizeDoubleArrayList	0.00
	testMeanAboveQuantile	0.00
	testRange	0.00
	testQuantile	0.00
	testQuantile75	0.00

TestCorrelationEffectMetaAnalysis

	testRunZFVar	0.09
	testRunZFEffect	0.00
	testRunZFZscore	0.00
	testRunUFVar	0.00
	testRunUFEffect	0.00
	testRunUFZscore	0.00
	testRunZRQval	0.00
	testRunZRBSV	0.00
	testRunURBSV	0.00

TestMeanDifferenceMetaAnalysis

	testRunFixedVar	0.04
	testRunFixedE	0.00
	testRunFixedQ	0.00
	testRunFixedZ	0.00
	testRunRandomVar	0.00
	testRunRandomE	0.00
	testRunRandomBSV	0.00
	testRunRandomZ	0.00

TestGOParser

testGOParser

0.31