Clover coverage report - baseCode - 0.2.5
Coverage timestamp: Tue Apr 12 2005 11:31:58 EDT
Overview   Package   File
    FRAMES   NO FRAMES  
file stats: LOC: 49   Methods: 1
NCLOC: 30   Classes: 1
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 Source file Conditionals Statements Methods TOTAL
ItemLevelFilter.java 80% 82.4% 100% 82.1%
coverage coverage
 1    
 package baseCode.dataFilter;
 2    
 
 3    
 import baseCode.dataStructure.matrix.DenseDoubleMatrix2DNamed;
 4    
 import baseCode.dataStructure.matrix.NamedMatrix;
 5    
 
 6    
 /**
 7    
  * Filter that remove individual values that are outside of a range. Removed values are set to NaN.
 8    
  * <p>
 9    
  * Copyright (c) 2004 Columbia University
 10    
  *
 11    
  * @author Pavlidis
 12    
  * @version $Id: ItemLevelFilter.java,v 1.5 2004/07/27 03:18:58 pavlidis Exp $
 13    
  */
 14    
 public class ItemLevelFilter extends AbstractLevelFilter {
 15    
 
 16  1 
    public NamedMatrix filter( NamedMatrix data ) {
 17  1 
       if ( !( data instanceof DenseDoubleMatrix2DNamed ) ) {
 18  0 
          throw new IllegalArgumentException(
 19    
                "Only valid for DenseDoubleMatrix2DNamed" );
 20    
       }
 21    
 
 22  1 
       if ( lowCut == -Double.MAX_VALUE && highCut == Double.MAX_VALUE ) {
 23  0 
          log.info( "No filtering requested" );
 24  0 
          return data;
 25    
       }
 26    
 
 27  1 
       int numRows = data.rows();
 28  1 
       int numCols = data.columns();
 29  1 
       DenseDoubleMatrix2DNamed returnval = new DenseDoubleMatrix2DNamed(
 30    
             numRows, numCols );
 31  1 
       for ( int i = 0; i < numRows; i++ ) {
 32    
 
 33  30 
          for ( int j = 0; j < numCols; j++ ) {
 34    
 
 35  360 
             double newVal = ( ( DenseDoubleMatrix2DNamed ) data ).get( i, j );
 36  360 
             if ( newVal < lowCut || newVal > highCut ) {
 37  77 
                newVal = Double.NaN;
 38    
             }
 39    
 
 40  360 
             returnval.set( i, j, newVal );
 41    
          }
 42    
       }
 43  1 
       returnval.setColumnNames( data.getColNames() );
 44  1 
       returnval.setRowNames( data.getRowNames() );
 45    
 
 46  1 
       return returnval;
 47    
    }
 48    
 
 49    
 }
 
CloverReport generated by Clover v1.2.3
Tue Apr 12 2005 11:31:59 EDT.		   30 day Evaluation Version distributed via the Maven Jar Repository. Clover is not free. You have 30 days to evaluate it.