| Clover coverage report - baseCode - 0.2.5 |
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| Source file | Conditionals | Statements | Methods | TOTAL | |||||||||||||||
| AbstractLevelFilter.java | 75% | 81.2% | 85.7% | 81.5% |
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package baseCode.dataFilter;
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import baseCode.math.Stats;
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/**
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* Abstract class representing a filter that removes things from matrices based on the values themselves. Copyright (c)
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* 2004 Columbia University
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*
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* @author Owner
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* @version $Id: AbstractLevelFilter.java,v 1.3 2004/07/27 03:18:58 pavlidis Exp $
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*/
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public abstract class AbstractLevelFilter extends AbstractFilter { |
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protected double lowCut = -Double.MAX_VALUE; |
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protected double highCut = Double.MAX_VALUE; |
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protected boolean useLowAsFraction = false; |
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protected boolean useHighAsFraction = false; |
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/**
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* Set the low threshold for removal.
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*
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* @param lowCut the threshold
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*/
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public void setLowCut( double lowCut ) { |
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this.lowCut = lowCut;
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} |
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/**
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* @param lowCut
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* @param isFraction
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*/
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public void setLowCut( double lowCut, boolean isFraction ) { |
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setLowCut( lowCut ); |
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setUseLowCutAsFraction( isFraction ); |
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useLowAsFraction = isFraction; |
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} |
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/**
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* Set the high threshold for removal. If not set, no filtering will occur.
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*
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* @param h the threshold
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*/
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public void setHighCut( double h ) { |
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highCut = h; |
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} |
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/**
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* @param highCut
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* @param isFraction
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*/
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public void setHighCut( double highCut, boolean isFraction ) { |
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setHighCut( highCut ); |
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setUseHighCutAsFraction( isFraction ); |
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useHighAsFraction = isFraction; |
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} |
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/**
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* @param setting
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*/
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public void setUseHighCutAsFraction( boolean setting ) { |
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if ( setting == true && !Stats.isValidFraction( highCut ) ) { |
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throw new IllegalArgumentException( |
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"Value for cut(s) are invalid for using "
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+ "as fractions, must be >0.0 and <1.0," );
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} |
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useHighAsFraction = setting; |
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} |
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/**
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* @param setting
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*/
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public void setUseLowCutAsFraction( boolean setting ) { |
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if ( setting == true && !Stats.isValidFraction( lowCut ) ) { |
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throw new IllegalArgumentException( |
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"Value for cut(s) are invalid for using "
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+ "as fractions, must be >0.0 and <1.0," );
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} |
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useLowAsFraction = setting; |
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} |
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/**
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* Set the filter to interpret the low and high cuts as fractions; that is, if true, lowcut 0.1 means remove 0.1 of
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* the rows with the lowest values. Otherwise the cuts are interpeted as actual values. Default = false.
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*
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* @param setting boolean
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*/
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public void setUseAsFraction( boolean setting ) { |
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setUseHighCutAsFraction( setting ); |
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setUseLowCutAsFraction( setting ); |
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} |
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} |
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