Uses of Interface
baseCode.util.StatusViewer

Packages that use StatusViewer

baseCode.bio.geneset
baseCode.gui
baseCode.util

Uses of StatusViewer in baseCode.bio.geneset

Methods in baseCode.bio.geneset with parameters of type StatusViewer

static void	GeneSetMapTools.removeAspect(GeneAnnotations ga, GONames gon, StatusViewer messenger, java.lang.String aspect)
static void	GeneSetMapTools.removeBySize(GeneAnnotations ga, StatusViewer messenger, int minClassSize, int maxClassSize) Remove gene sets that don't meet certain criteria.
static void	GeneSetMapTools.ignoreSimilar(double fractionSameThreshold, GeneAnnotations ga, StatusViewer messenger, int maxClassSize, int minClassSize, double bigClassPenalty) Remove classes which are too similar to some other class.
static void	GeneSetMapTools.collapseGeneSets(GeneAnnotations geneData, StatusViewer messenger) Identify classes which are absoluely identical to others.

Constructors in baseCode.bio.geneset with parameters of type StatusViewer

GeneAnnotations(java.lang.String filename, StatusViewer messenger)
This is for creating GeneAnnotations by reading from a file

GeneAnnotations(java.io.InputStream stream, java.util.Set activeGenes, StatusViewer messenger)
Make a new GeneAnnotations that only includes the probes in the parameter 'probes'.

GeneAnnotations(java.lang.String fileName, java.util.Set activeGenes, StatusViewer messenger)

Uses of StatusViewer in baseCode.gui

Classes in baseCode.gui that implement StatusViewer

class

StatusJlabel Title:

Uses of StatusViewer in baseCode.util

Classes in baseCode.util that implement StatusViewer

class	StatusDebugLogger Copyright (c) 2004 Columbia University
class	StatusStderr Prints status info to stderr