Uses of Class
baseCode.dataStructure.matrix.AbstractNamedDoubleMatrix

Packages that use AbstractNamedDoubleMatrix

baseCode.algorithm.learning.unsupervised
baseCode.dataStructure.matrix
baseCode.gui
baseCode.math
baseCode.util

Uses of AbstractNamedDoubleMatrix in baseCode.algorithm.learning.unsupervised

Methods in baseCode.algorithm.learning.unsupervised with parameters of type AbstractNamedDoubleMatrix

cern.colt.matrix.DoubleMatrix1D	RankProp.computeRanking(AbstractNamedDoubleMatrix matrix, AbstractNamedDoubleMatrix query, int k)
cern.colt.matrix.DoubleMatrix1D	RankProp.computeRanking(AbstractNamedDoubleMatrix matrix, cern.colt.matrix.DoubleMatrix1D query, int indexOfQuery)

Uses of AbstractNamedDoubleMatrix in baseCode.dataStructure.matrix

Subclasses of AbstractNamedDoubleMatrix in baseCode.dataStructure.matrix

class	DenseDoubleMatrix2DNamed A matrix of doubles that knows about row and column names.
class	SparseDoubleMatrix2DNamed Title: SparseDoubleMatrix2DNamed
class	SparseRaggedDoubleMatrix2DNamed A sparse matrix class where the rows are ragged and compressed.

Uses of AbstractNamedDoubleMatrix in baseCode.gui

Fields in baseCode.gui declared as AbstractNamedDoubleMatrix

protected AbstractNamedDoubleMatrix

ColorMatrix.m_matrix

Methods in baseCode.gui that return AbstractNamedDoubleMatrix

AbstractNamedDoubleMatrix	ColorMatrix.getMatrix()
AbstractNamedDoubleMatrix	JMatrixDisplay.getMatrix()

Methods in baseCode.gui with parameters of type AbstractNamedDoubleMatrix

void	ColorMatrix.init(AbstractNamedDoubleMatrix matrix)

Constructors in baseCode.gui with parameters of type AbstractNamedDoubleMatrix

ColorMatrix(AbstractNamedDoubleMatrix matrix, java.awt.Color[] colorMap, java.awt.Color missingColor)

Uses of AbstractNamedDoubleMatrix in baseCode.math

Methods in baseCode.math with parameters of type AbstractNamedDoubleMatrix

static DenseDoubleMatrix2DNamed	MatrixStats.correlationMatrix(AbstractNamedDoubleMatrix data)
static SparseDoubleMatrix2DNamed	MatrixStats.correlationMatrix(AbstractNamedDoubleMatrix data, double threshold)
static double	MatrixStats.min(AbstractNamedDoubleMatrix matrix) Find the minimum of the entire matrix.
static double	MatrixStats.max(AbstractNamedDoubleMatrix matrix) Compute the maximum value in the matrix.
static void	MatrixStats.rbfNormalize(AbstractNamedDoubleMatrix matrixToNormalize, double sigma) Normalize a matrix in place to be a transition matrix.
static void	MatrixStats.countsNormalize(AbstractNamedDoubleMatrix matrixToNormalize, double sigma) Normalize a count matrix in place to be a transition matrix.

Uses of AbstractNamedDoubleMatrix in baseCode.util

Methods in baseCode.util with parameters of type AbstractNamedDoubleMatrix

static boolean

RegressionTesting.closeEnough(AbstractNamedDoubleMatrix a, AbstractNamedDoubleMatrix b, double tolerance) Test whether two AbstractNamedDoubleMatrix are 'close enough' to call equal.