baseCode.dataStructure.matrix
Class SparseDoubleMatrix2DNamed

java.lang.Object
  baseCode.dataStructure.matrix.AbstractNamedMatrix
      baseCode.dataStructure.matrix.AbstractNamedDoubleMatrix
          baseCode.dataStructure.matrix.SparseDoubleMatrix2DNamed

All Implemented Interfaces:

NamedMatrix

public class SparseDoubleMatrix2DNamed

extends AbstractNamedDoubleMatrix

implements NamedMatrix

Title: SparseDoubleMatrix2DNamed

Description: A sparse matrix that knows about row and column names.

Copyright (c) 2004

Institution:: Columbia University

Version:

$Id: SparseDoubleMatrix2DNamed.java,v 1.5 2004/08/16 02:06:01 pavlidis Exp $

Author:

Paul Pavlidis

Constructor Summary

SparseDoubleMatrix2DNamed(double[][] T)

SparseDoubleMatrix2DNamed(int rows, int cols)

Method Summary

int	cardinality()
int	columns() Get the number of columns the matrix has.
void	ensureCapacity(int minNonZeros)
double	get(int row, int column)
double[]	getCol(int col) Return a copy of a given column.
java.lang.Object[]	getColObj(int col)
double	getQuick(int row, int column)
double[]	getRow(int row) Return a reference to a specific row.
cern.colt.list.DoubleArrayList	getRowArrayList(int i)
double[]	getRowByName(java.lang.String s)
java.lang.Object[]	getRowObj(int row) Get a row in the matrix as a generic Object[].
boolean	isMissing(int i, int j) Check if the value at a given index is missing.
int	rows() Get the number of rows the matrix has
void	set(int row, int column, double value)
void	set(int row, int col, java.lang.Object value) Set a value in the matrix.
void	setQuick(int row, int column, double value)
int	size()
java.lang.String	toString()
void	trimToSize()
cern.colt.matrix.DoubleMatrix1D	viewColumn(int column)
cern.colt.matrix.DoubleMatrix1D	viewRow(int row)

Methods inherited from class baseCode.dataStructure.matrix.AbstractNamedMatrix

addColumnName, addColumnName, addRowName, addRowName, containsColumnName, containsRowName, getColIndexByName, getColName, getColNames, getRowIndexByName, getRowName, getRowNameMapIterator, getRowNames, hasColNames, hasRow, hasRowNames, numMissing, setColumnNames, setRowNames

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface baseCode.dataStructure.matrix.NamedMatrix

addColumnName, addRowName, containsColumnName, containsRowName, getColIndexByName, getColName, getColNames, getRowIndexByName, getRowName, getRowNameMapIterator, getRowNames, hasColNames, hasRow, hasRowNames, numMissing, setColumnNames, setRowNames

Constructor Detail

SparseDoubleMatrix2DNamed

public SparseDoubleMatrix2DNamed(double[][] T)

Parameters:

T - double[][]

SparseDoubleMatrix2DNamed

public SparseDoubleMatrix2DNamed(int rows,
                                 int cols)

Parameters:

rows - int

cols - int

Method Detail

set

public void set(int row,
                int col,
                java.lang.Object value)

Description copied from interface: NamedMatrix

Set a value in the matrix.

Specified by:

set in interface NamedMatrix

Specified by:

set in class AbstractNamedDoubleMatrix

getRow

public double[] getRow(int row)

Return a reference to a specific row.

Specified by:

getRow in class AbstractNamedDoubleMatrix

Parameters:

row - int

Returns:

double[]

getCol

public double[] getCol(int col)

Return a copy of a given column.

Parameters:

col - int

Returns:

double[]

getRowObj

public java.lang.Object[] getRowObj(int row)

Description copied from interface: NamedMatrix

Get a row in the matrix as a generic Object[]. This exists so NamedMatrices can be used more generically.

Specified by:

getRowObj in interface NamedMatrix

Specified by:

getRowObj in class AbstractNamedDoubleMatrix

getColObj

public java.lang.Object[] getColObj(int col)

Specified by:

getColObj in interface NamedMatrix

Specified by:

getColObj in class AbstractNamedDoubleMatrix

toString

public java.lang.String toString()

Returns:

java.lang.String

getRowByName

public double[] getRowByName(java.lang.String s)

Overrides:

getRowByName in class AbstractNamedDoubleMatrix

Parameters:

s - String

Returns:

double[]

isMissing

public boolean isMissing(int i,
                         int j)

Description copied from interface: NamedMatrix

Check if the value at a given index is missing.

Specified by:

isMissing in interface NamedMatrix

Specified by:

isMissing in class AbstractNamedDoubleMatrix

columns

public int columns()

Description copied from interface: NamedMatrix

Get the number of columns the matrix has.

Specified by:

columns in interface NamedMatrix

Specified by:

columns in class AbstractNamedDoubleMatrix

Returns:

get

public double get(int row,
                  int column)

Specified by:

get in class AbstractNamedDoubleMatrix

Parameters:

row -

column -

Returns:

getQuick

public double getQuick(int row,
                       int column)

Specified by:

getQuick in class AbstractNamedDoubleMatrix

Parameters:

row -

column -

Returns:

rows

public int rows()

Description copied from interface: NamedMatrix

Get the number of rows the matrix has

Specified by:

rows in interface NamedMatrix

Specified by:

rows in class AbstractNamedDoubleMatrix

Returns:

set

public void set(int row,
                int column,
                double value)

Specified by:

set in class AbstractNamedDoubleMatrix

Parameters:

row -

column -

value -

setQuick

public void setQuick(int row,
                     int column,
                     double value)

Parameters:

row -

column -

value -

viewColumn

public cern.colt.matrix.DoubleMatrix1D viewColumn(int column)

Parameters:

column -

Returns:

viewRow

public cern.colt.matrix.DoubleMatrix1D viewRow(int row)

Specified by:

viewRow in class AbstractNamedDoubleMatrix

Parameters:

row -

Returns:

cardinality

public int cardinality()

Returns:

ensureCapacity

public void ensureCapacity(int minNonZeros)

Parameters:

minNonZeros -

size

public int size()

Returns:

trimToSize

public void trimToSize()

getRowArrayList

public cern.colt.list.DoubleArrayList getRowArrayList(int i)

Specified by:

getRowArrayList in class AbstractNamedDoubleMatrix